A SNP Genetic Map for Pacific White Shrimp (Litopenaeus vannamei)

dc.contributor.author Du, Zhi-Qiang
dc.contributor.author Onteru, Suneel
dc.contributor.author Rothschild, Max
dc.contributor.author Gorbach, Danielle
dc.contributor.author Rothschild, Max
dc.date 2018-08-25T20:01:29.000
dc.date.accessioned 2020-06-29T23:32:33Z
dc.date.available 2020-06-29T23:32:33Z
dc.date.copyright Fri Jan 01 00:00:00 UTC 2010
dc.date.issued 2010-01-01
dc.description.abstract <p>Pacific white shrimp are of particular economic importance to the global shrimp aquaculture industry. We utilized the limited public sequence information, mainly genetic markers called single nucleotide polymorphisms (SNPs) and expressed sequence tags, to discover markers for the construction of the first SNP genetic map for Pacific white shrimp. In total, 1344 putative SNPs were discovered, and out of 825 SNPs genotyped, 418 SNP markers from 347 contigs were mapped onto 45 sex-averaged linkage groups, with approximate coverage of 2071 and 2130 cM for the female and male maps, respectively. Comparative mapping to model organisms, Daphnia pulex and Drosophila melanogaster, revealed extensive rearrangement of genome architecture for L. vannamei, and that L. vannamei was more related to Daphnia pulex. This SNP genetic map lays the foundation for future shrimp genomics studies, especially the identification of genetic markers or regions for economically important traits.</p>
dc.identifier archive/lib.dr.iastate.edu/ans_air/vol656/iss1/35/
dc.identifier.articleid 1553
dc.identifier.contextkey 3393835
dc.identifier.doi https://doi.org/10.31274/ans_air-180814-604
dc.identifier.s3bucket isulib-bepress-aws-west
dc.identifier.submissionpath ans_air/vol656/iss1/35
dc.identifier.uri https://dr.lib.iastate.edu/handle/20.500.12876/8684
dc.language.iso en
dc.relation.ispartofseries Animal Science Research Reports
dc.source.bitstream archive/lib.dr.iastate.edu/ans_air/vol656/iss1/35/R2514.pdf|||Fri Jan 14 23:43:09 UTC 2022
dc.subject.disciplines Agriculture
dc.subject.disciplines Animal Sciences
dc.subject.keywords ASL R2514
dc.title A SNP Genetic Map for Pacific White Shrimp (Litopenaeus vannamei)
dc.type article
dc.type.genre companion_animal
dspace.entity.type Publication
relation.isAuthorOfPublication a5915699-0c8a-411e-a601-1564d7090ab9
relation.isJournalIssueOfPublication d2f1e264-8d1c-46ff-bfdb-6c982aaaf7bd
relation.isSeriesOfPublication 7f3839b7-b833-4418-a6fa-adda2b23950a
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