Genetic control and geo-climate adaptation of pod dehiscence provide novel insights into the soybean domestication and expansion

dc.contributor.author Zhang, Jiaoping
dc.contributor.author Singh, Asheesh
dc.contributor.author Singh, Asheesh
dc.contributor.department Agronomy
dc.date 2018-12-09T15:48:48.000
dc.date.accessioned 2020-06-29T23:06:02Z
dc.date.available 2020-06-29T23:06:02Z
dc.date.copyright Mon Jan 01 00:00:00 UTC 2018
dc.date.issued 2018-08-02
dc.description.abstract <p>Loss of pod dehiscence is a key step during soybean [Glycine max (L.) Merr.] domestication. Genome-wide association analysis for soybean shattering identified loci harboring Pdh1, NST1A and SHAT1-5. Pairwise epistatic interactions were observed, and the dehiscent Pdh1 overcomes the resistance conferred by NST1A or SHAT1-5 locus, indicating that Pdh1 predominates pod dehiscence expression. Further candidate gene association analysis identified a nonsense mutation in NST1A associated with pod dehiscence. Allele composition and population differential analyses unraveled that Pdh1 and NST1A, but not SHAT1-5, underwent domestication and modern breeding selections. Geographic analysis showed that in Northeast China (NEC), indehiscence at both Pdh1 and NST1A were required by cultivated soybean; while indehiscent Pdh1 alone is capable of coping shattering in Huang-Huai-Hai (HHH) valleys where it originated; and no specific indehiscence was required in Southern China (SC). Geo-climatic investigation revealed strong correlation between relative humidity and frequency of indehiscent Pdh1 across China. This study demonstrates that the epistatic interaction between Pdh1 and NST1A fulfills a pivotal role in determining the level of resistance against pod dehiscence. Humidity shapes the distribution of indehiscent alleles. Our results also suggest that HHH valleys, not NEC, was at least one of the origin centers of cultivated soybean.</p>
dc.description.comments <p>This is a pre-print made available through arxiv: <a href="https://arxiv.org/abs/1808.00996" target="_blank">https://arxiv.org/abs/1808.00996</a>,</p>
dc.format.mimetype application/pdf
dc.identifier archive/lib.dr.iastate.edu/agron_pubs/543/
dc.identifier.articleid 1598
dc.identifier.contextkey 13413630
dc.identifier.s3bucket isulib-bepress-aws-west
dc.identifier.submissionpath agron_pubs/543
dc.identifier.uri https://dr.lib.iastate.edu/handle/20.500.12876/4909
dc.language.iso en
dc.source.bitstream archive/lib.dr.iastate.edu/agron_pubs/543/2018_Singh_GeneticControlPreprint.pdf|||Sat Jan 15 00:53:56 UTC 2022
dc.subject.disciplines Agriculture
dc.subject.disciplines Agronomy and Crop Sciences
dc.subject.disciplines Climate
dc.subject.disciplines Plant Breeding and Genetics
dc.subject.keywords soybean
dc.subject.keywords domestication
dc.subject.keywords pod dehiscence
dc.subject.keywords seed shattering
dc.subject.keywords candidate gene association analysis
dc.subject.keywords geo-climate adaptation
dc.title Genetic control and geo-climate adaptation of pod dehiscence provide novel insights into the soybean domestication and expansion
dc.type article
dc.type.genre article
dspace.entity.type Publication
relation.isAuthorOfPublication cdeb4dae-b065-4dd9-9831-9aa5ca394e25
relation.isOrgUnitOfPublication fdd5c06c-bdbe-469c-a38e-51e664fece7a
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