Integrated ‘omics’ characterization of conserved nectar production mechanisms using floral and extrafloral eudicot nectaries

dc.contributor.advisor Basil J. Nikolau
dc.contributor.author Chatt, Elizabeth
dc.contributor.department Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology (LAS)
dc.date 2019-12-10T20:08:44.000
dc.date.accessioned 2020-06-30T03:16:18Z
dc.date.available 2020-06-30T03:16:18Z
dc.date.copyright Wed May 01 00:00:00 UTC 2019
dc.date.embargo 2019-10-16
dc.date.issued 2019-01-01
dc.description.abstract <p>Floral and extrafloral nectar, produced by nectaries, is offered as a reward to foster plant-animal mutualisms with pollinators and invertebrate predators. Attraction of pollinators through floral nectar improves fruit set in 87 out of 115 global food crops. Meanwhile extrafloral nectar, reported in 745 genera, attracts invertebrate predators, such as ants, as an indirect defense mechanism to reduce herbivory. Nectar quality (i.e. volume and composition) strongly correlates with the efficiency of these plant-animal mutualistic interactions, yet nectar composition has typically only been defined by targeted analyses of the two most predominant classes of metabolites, carbohydrates and amino acids. Other less abundant components of nectar are often unaccounted (i.e. vitamins, alkaloids, phenolics, terpenoids, lipids, metal ions, hormones, and proteins). Furthermore, molecular understanding of nectar synthesis and secretion is limited to a few reports of genes directly affecting the de novo production or quality of floral nectar.</p> <p>Comprehensive GC-MS based metabolomics techniques capable of quantifying trace components of nectar were used to characterize nectar composition from species, spanning three eudicot families (Cucurbitaceae, Malvaceae, and Solanaceae). This enabled examination of relationships between nectar composition and biological factors such as the sex of the flower, plant-animal mutualisms, and functional role of the nectar regarding plant reproductive success and defense (i.e. floral and extrafloral nectar).</p> <p>These analyses contributed the metabolomics portion of a comprehensive systems network-based project to define the conserved molecular mechanisms of nectar synthesis and secretion among floral and extrafloral nectaries of the core eudicots. Through the analysis of the transcriptomes and proteomes of nectaries from a broad range of phylogenetic plant clades, we identified core sets of genes conserved within eudicots required for nectary synthesis and secretion. These results also supply a foundation for targeted studies of nectar quality improvement, which will benefit pollinator health, promote plant reproductive success, and enhances biological control of crop pests.</p>
dc.format.mimetype application/pdf
dc.identifier archive/lib.dr.iastate.edu/etd/17154/
dc.identifier.articleid 8161
dc.identifier.contextkey 15015911
dc.identifier.s3bucket isulib-bepress-aws-west
dc.identifier.submissionpath etd/17154
dc.identifier.uri https://dr.lib.iastate.edu/handle/20.500.12876/31337
dc.language.iso en
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/0-Chapter_2_Supplementary_table_1_metabolome.xlsx|||Fri Jan 14 21:17:29 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/0-Chapter_2_Supplementary_table__2_nectar_proteome.xlsx|||Thu Nov 19 18:41:50 UTC 2020
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/1-Chapter_2_Supplementary_table_1_metabolome.xlsx|||Fri Jan 14 21:17:27 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/10-Chapter_3_Supplemental_File_6_Spatial_DEG_Venn_Diagrams.xlsx|||Fri Jan 14 21:17:37 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/11-Chapter_3_Supplemental_File_7_temporal_DEG_scatter_plots.xlsx|||Thu Nov 19 19:03:26 UTC 2020
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/11-Chapter_3_Supplemental_File_8_temporal_DEG_GO_Enrichment.xlsx|||Fri Jan 14 21:17:24 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/12-Chapter_3_Supplemental_File_9_Temporal_DEG_Venn_Diagrams.xlsx|||Fri Jan 14 21:17:33 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/13-Chapter_3_Supplemental_File_10_pathways.xlsx|||Fri Jan 14 21:17:30 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/14-Chapter_4_Supplemental_File_1_Tobacco_Nectar_Metabolome.xlsx|||Thu Nov 19 19:11:54 UTC 2020
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/14-Chapter_4_Supplemental_File_2_Nectar_Sugars_and_Amino_Acids_Sum.xlsx|||Fri Jan 14 21:17:35 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/15-Chapter_4_Supplemental_File_1_Tobacco_Nectar_Metabolome.xlsx|||Fri Jan 14 21:17:34 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/16-Chapter_4_Supplemental_File_3_Section_Clusters.xlsx|||Fri Jan 14 21:17:29 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/17-Chapter_4_Supplemental_File_4_Pollinator_Clusters.xlsx|||Fri Jan 14 21:17:26 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/18-Chapter_3_Supplemental_File_7_temporal_DEG_scatter_plots.xlsx|||Fri Jan 14 21:17:28 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/2-Chapter_2_Supplementary_table_3_nectary_proteome_total.xlsx|||Fri Jan 14 21:17:26 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/3-Chapter_2_Supplementary_table_4_protein_to_GO_mapping.xlsx|||Fri Jan 14 21:17:31 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/4-Chapter_2_Supplementary_table_5_GO_enriched_terms.xlsx|||Fri Jan 14 21:17:36 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/5-Chapter_3_Supplemental_File_1_microscopy_summary.docx|||Fri Jan 14 21:17:38 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/6-Chapter_3_Supplemental_File_2__Cotton_Metabolome.xlsx|||Fri Jan 14 21:17:31 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/7-Chapter_3_Supplemental_File_3_Total_Transcriptome.xlsx|||Fri Jan 14 21:17:25 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/8-Chapter_3_Supplemental_File_4_spatial_DEG_scatter_plots.xlsx|||Fri Jan 14 21:17:35 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/9-Chapter_3_Supplemental_File_5_Spatial_DEG_GO_Enrichment.xlsx|||Fri Jan 14 21:17:32 UTC 2022
dc.source.bitstream archive/lib.dr.iastate.edu/etd/17154/Chatt_iastate_0097E_18013.pdf|||Fri Jan 14 21:17:39 UTC 2022
dc.subject.disciplines Agriculture
dc.subject.disciplines Plant Sciences
dc.subject.keywords cotton
dc.subject.keywords metabolomics
dc.subject.keywords nectar
dc.subject.keywords nectary
dc.subject.keywords pumpkin
dc.supplemental.bitstream Chapter_2_Supplementary_table_1_metabolome.xlsx
dc.supplemental.bitstream 1-Chapter_2_Supplementary_table_1_metabolome.xlsx
dc.supplemental.bitstream Chapter_2_Supplementary_table_3_nectary_proteome_total.xlsx
dc.supplemental.bitstream Chapter_2_Supplementary_table_4_protein_to_GO_mapping.xlsx
dc.supplemental.bitstream Chapter_2_Supplementary_table_5_GO_enriched_terms.xlsx
dc.supplemental.bitstream Chapter_3_Supplemental_File_1_microscopy_summary.docx
dc.supplemental.bitstream Chapter_3_Supplemental_File_2__Cotton_Metabolome.xlsx
dc.supplemental.bitstream Chapter_3_Supplemental_File_3_Total_Transcriptome.xlsx
dc.supplemental.bitstream Chapter_3_Supplemental_File_4_spatial_DEG_scatter_plots.xlsx
dc.supplemental.bitstream Chapter_3_Supplemental_File_5_Spatial_DEG_GO_Enrichment.xlsx
dc.supplemental.bitstream Chapter_3_Supplemental_File_6_Spatial_DEG_Venn_Diagrams.xlsx
dc.supplemental.bitstream Chapter_3_Supplemental_File_8_temporal_DEG_GO_Enrichment.xlsx
dc.supplemental.bitstream Chapter_3_Supplemental_File_9_Temporal_DEG_Venn_Diagrams.xlsx
dc.supplemental.bitstream Chapter_3_Supplemental_File_10_pathways.xlsx
dc.supplemental.bitstream Chapter_4_Supplemental_File_2_Nectar_Sugars_and_Amino_Acids_Summary.xlsx
dc.supplemental.bitstream Chapter_4_Supplemental_File_1_Tobacco_Nectar_Metabolome.xlsx
dc.supplemental.bitstream Chapter_4_Supplemental_File_3_Section_Clusters.xlsx
dc.supplemental.bitstream Chapter_4_Supplemental_File_4_Pollinator_Clusters.xlsx
dc.supplemental.bitstream Chapter_3_Supplemental_File_7_temporal_DEG_scatter_plots.xlsx
dc.title Integrated ‘omics’ characterization of conserved nectar production mechanisms using floral and extrafloral eudicot nectaries
dc.type dissertation
dc.type.genre dissertation
dspace.entity.type Publication
relation.isOrgUnitOfPublication faf0a6cb-16ca-421c-8f48-9fbbd7bc3747
thesis.degree.discipline Plant Biology
thesis.degree.level dissertation
thesis.degree.name Doctor of Philosophy
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