The khmer software package: enabling efficient nucleotide sequence analysis

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dc.contributor.author Crusoe, Michael
dc.contributor.author Alameldin, Hussein
dc.contributor.author Awad, Sherine
dc.contributor.author Howe, Adina
dc.contributor.author Boucher, Elmar
dc.contributor.author Caldwell, Adam
dc.contributor.author Cartwright, Reed
dc.contributor.author Charbonneau, Amanda
dc.contributor.author Constantinides, Bede
dc.contributor.author Edvenson, Greg
dc.contributor.author Fay, Scott
dc.contributor.author Fenton, Jacob
dc.contributor.author Fenzl, Thomas
dc.contributor.author Fish, Jordan
dc.contributor.author Garcia-Gutierrez, Leonor
dc.contributor.author Garland, Phillip
dc.contributor.author Gluck, Jonathan
dc.contributor.author González, Iván
dc.contributor.author Guermond, Sarah
dc.contributor.author Guo, Jiarong
dc.contributor.author Gupta, Aditi
dc.contributor.author Herr, Joshua
dc.contributor.author Howe, Adina
dc.contributor.author Hyer, Alex
dc.contributor.author Härpfer, Andreas
dc.contributor.author Irber, Luiz
dc.contributor.author Kidd, Rhys
dc.contributor.author Lin, David
dc.contributor.author Lippi, Justin
dc.contributor.author Mansour, Tamer
dc.contributor.author McA'Nulty, Pamela
dc.contributor.author McDonald, Erin
dc.contributor.author Mizzi, Jessica
dc.contributor.author Murray, Kevin
dc.contributor.author Nahum, Joshua
dc.contributor.author Nanlohy, Kaben
dc.contributor.author Nederbragt, Alexander
dc.contributor.author Ortiz-Zuazaga, Humberto
dc.contributor.author Ory, Jeramia
dc.contributor.author Pell, Jason
dc.contributor.author Pepe-Ranney, Charles
dc.contributor.author Russ, Zachary
dc.contributor.author Schwarz, Erich
dc.contributor.author Scott, Camille
dc.contributor.author Seaman, Josiah
dc.contributor.author Sievert, Scott
dc.contributor.author Simpson, Jared
dc.contributor.author Skennerton, Connor
dc.contributor.author Spencer, James
dc.contributor.author Srinivasan, Ramakrishnan
dc.contributor.author Standage, Daniel
dc.contributor.author Stapleton, James
dc.contributor.author Steinman, Susan
dc.contributor.author Stein, Joe
dc.contributor.author Taylor, Benjamin
dc.contributor.author Tremble, Will
dc.contributor.author Wiencko, Heather
dc.contributor.author Wright, Michael
dc.contributor.author Wyss, Brian
dc.contributor.author Zhang, Qingpeng
dc.contributor.author zyme, en
dc.contributor.author Brown, C. Titus
dc.contributor.department Bioinformatics and Computational Biology
dc.contributor.department Agricultural and Biosystems Engineering
dc.date 2018-02-17T09:22:54.000
dc.date.accessioned 2020-06-29T22:42:04Z
dc.date.available 2020-06-29T22:42:04Z
dc.date.copyright Thu Jan 01 00:00:00 UTC 2015
dc.date.issued 2015-09-25
dc.description.abstract <p>The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruijn graph partitioning, and digital normalization. khmer is implemented in C++ and Python, and is freely available under the BSD license at <a href="https://github.com/dib-lab/khmer/">https://github.com/dib-lab/khmer/</a>.</p>
dc.description.comments <p>This article is from <em>F1000Research</em> 2015, <strong>4</strong>:900 (doi:<a href="http://dx.doi.org/10.12688/f1000research.6924.1" target="_blank">10.12688/f1000research.6924.1</a>). Posted with permission.</p>
dc.format.mimetype application/pdf
dc.identifier archive/lib.dr.iastate.edu/abe_eng_pubs/713/
dc.identifier.articleid 1996
dc.identifier.contextkey 7965629
dc.identifier.s3bucket isulib-bepress-aws-west
dc.identifier.submissionpath abe_eng_pubs/713
dc.identifier.uri https://dr.lib.iastate.edu/handle/20.500.12876/1508
dc.language.iso en
dc.source.bitstream archive/lib.dr.iastate.edu/abe_eng_pubs/713/2015_Crusoe_KhmerSoftware.pdf|||Sat Jan 15 01:42:59 UTC 2022
dc.source.uri 10.12688/f1000research.6924.1
dc.subject.disciplines Agriculture
dc.subject.disciplines Bioresource and Agricultural Engineering
dc.subject.disciplines Computational Biology
dc.subject.disciplines Numerical Analysis and Scientific Computing
dc.title The khmer software package: enabling efficient nucleotide sequence analysis
dc.type article
dc.type.genre article
dspace.entity.type Publication
relation.isAuthorOfPublication e2017bbe-ba62-4969-946e-aaf072d8bb4f
relation.isOrgUnitOfPublication c331f825-0643-499a-9eeb-592c7b43b1f5
relation.isOrgUnitOfPublication 8eb24241-0d92-4baf-ae75-08f716d30801
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