The khmer software package: enabling efficient nucleotide sequence analysis Crusoe, Michael Alameldin, Hussein Awad, Sherine Howe, Adina Boucher, Elmar Caldwell, Adam Cartwright, Reed Charbonneau, Amanda Constantinides, Bede Edvenson, Greg Fay, Scott Fenton, Jacob Fenzl, Thomas Fish, Jordan Garcia-Gutierrez, Leonor Garland, Phillip Gluck, Jonathan González, Iván Guermond, Sarah Guo, Jiarong Gupta, Aditi Herr, Joshua Howe, Adina Hyer, Alex Härpfer, Andreas Irber, Luiz Kidd, Rhys Lin, David Lippi, Justin Mansour, Tamer McA'Nulty, Pamela McDonald, Erin Mizzi, Jessica Murray, Kevin Nahum, Joshua Nanlohy, Kaben Nederbragt, Alexander Ortiz-Zuazaga, Humberto Ory, Jeramia Pell, Jason Pepe-Ranney, Charles Russ, Zachary Schwarz, Erich Scott, Camille Seaman, Josiah Sievert, Scott Simpson, Jared Skennerton, Connor Spencer, James Srinivasan, Ramakrishnan Standage, Daniel Stapleton, James Steinman, Susan Stein, Joe Taylor, Benjamin Tremble, Will Wiencko, Heather Wright, Michael Wyss, Brian Zhang, Qingpeng zyme, en Brown, C. Titus
dc.contributor.department Bioinformatics and Computational Biology
dc.contributor.department Agricultural and Biosystems Engineering 2018-02-17T09:22:54.000 2020-06-29T22:42:04Z 2020-06-29T22:42:04Z Thu Jan 01 00:00:00 UTC 2015 2015-09-25
dc.description.abstract <p>The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruijn graph partitioning, and digital normalization. khmer is implemented in C++ and Python, and is freely available under the BSD license at <a href=""></a>.</p>
dc.description.comments <p>This article is from <em>F1000Research</em> 2015, <strong>4</strong>:900 (doi:<a href="" target="_blank">10.12688/f1000research.6924.1</a>). Posted with permission.</p>
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dc.identifier.articleid 1996
dc.identifier.contextkey 7965629
dc.identifier.s3bucket isulib-bepress-aws-west
dc.identifier.submissionpath abe_eng_pubs/713
dc.language.iso en
dc.source.bitstream archive/|||Sat Jan 15 01:42:59 UTC 2022
dc.source.uri 10.12688/f1000research.6924.1
dc.subject.disciplines Agriculture
dc.subject.disciplines Bioresource and Agricultural Engineering
dc.subject.disciplines Computational Biology
dc.subject.disciplines Numerical Analysis and Scientific Computing
dc.title The khmer software package: enabling efficient nucleotide sequence analysis
dc.type article
dc.type.genre article
dspace.entity.type Publication
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