Microbiome analyses of pacific white shrimp (Litopenaeus vannamei) collected from disparate geographical locations

dc.contributor.author Rothschild, Max
dc.contributor.author Severin, Andrew
dc.contributor.author Seetharam, Arun
dc.contributor.author Kawaler, Emily
dc.contributor.author Du, Zhi-Qiang
dc.contributor.author Rothschild, Max
dc.contributor.author Severin, Andrew
dc.contributor.author Seetharam, Arun
dc.contributor.department Animal Science
dc.contributor.department Genome Informatics Facility
dc.date 2018-02-17T17:14:10.000
dc.date.accessioned 2020-06-30T04:05:17Z
dc.date.available 2020-06-30T04:05:17Z
dc.date.copyright Thu Jan 01 00:00:00 UTC 2015
dc.date.issued 2015-12-01
dc.description.abstract <p>In this study, the tail muscle microbiota of pacific white shrimp (<em>Litopenaeus vannamei</em>) sourced from five countries across Central and South America and Southeast Asia were determined and compared. The genomic DNA was sequenced at around 10 × coverage for each geographical location and was assembled <em>de novo</em> for comparative analysis. The assembled sequences for all the lines were classified based on their similarity to the sequences in the public database. We found that there is high correlation among the microbiota of shrimp from disparate regions, as well as the presence of some DNA from bacteria known to cause food poisoning in humans. Sequencing data has been deposited at NCBI-SRA database and can be found under the BioProject ID PRJNA282154.</p>
dc.description.comments <p>This article is from <em>Genomics Data</em> 6 (2015): 67–69, doi:<a href="http://dx.doi.org/10.1016/j.gdata.2015.08.009" id="x-ddDoi">10.1016/j.gdata.2015.08.009</a>. Posted with permission.</p>
dc.format.mimetype application/pdf
dc.identifier archive/lib.dr.iastate.edu/genomeinformatics_pubs/1/
dc.identifier.articleid 1000
dc.identifier.contextkey 8596647
dc.identifier.s3bucket isulib-bepress-aws-west
dc.identifier.submissionpath genomeinformatics_pubs/1
dc.identifier.uri https://dr.lib.iastate.edu/handle/20.500.12876/38328
dc.language.iso en
dc.source.bitstream archive/lib.dr.iastate.edu/genomeinformatics_pubs/1/2015_Seetharam_MicrobiomeAnalyses.pdf|||Fri Jan 14 17:34:38 UTC 2022
dc.source.uri 10.1016/j.gdata.2015.08.009
dc.subject.disciplines Aquaculture and Fisheries
dc.subject.disciplines Bioinformatics
dc.subject.disciplines Genomics
dc.subject.keywords Shrimp
dc.subject.keywords Litopenaeus vannamei
dc.subject.keywords Microbiome
dc.subject.keywords Next-generation sequencing
dc.subject.keywords Geographical diversity
dc.title Microbiome analyses of pacific white shrimp (Litopenaeus vannamei) collected from disparate geographical locations
dc.type article
dc.type.genre article
dspace.entity.type Publication
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