Development and mapping of DArT markers within the Festuca - Lolium complex

Date
2009-02-05
Authors
Kopecký, David
Bartoš, Jan
Lubberstedt, Thomas
Lukaszewski, Adam
Baird, James
Černoch, Vladimír
Kölliker, Roland
Rognli, Odd
Blois, Helene
Caig, Vanessa
Lubberstedt, Thomas
Studer, Bruno
Shaw, Paul
Doležel, Jaroslav
Kilian, Andrzej
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Agronomy
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Agronomy
Abstract

Background

Grasses are among the most important and widely cultivated plants on Earth. They provide high quality fodder for livestock, are used for turf and amenity purposes, and play a fundamental role in environment protection. Among cultivated grasses, species within the Festuca-Lolium complex predominate, especially in temperate regions. To facilitate high-throughput genome profiling and genetic mapping within the complex, we have developed a Diversity Arrays Technology (DArT) array for five grass species: F. pratensis, F. arundinacea, F. glaucescens, L. perenne and L. multiflorum.

Results

The DArTFest array contains 7680 probes derived from methyl-filtered genomic representations. In a first marker discovery experiment performed on 40 genotypes from each species (with the exception of F. glaucescens for which only 7 genotypes were used), we identified 3884 polymorphic markers. The number of DArT markers identified in every single genotype varied from 821 to 1852. To test the usefulness of DArTFest array for physical mapping, DArT markers were assigned to each of the seven chromosomes of F. pratensis using single chromosome substitution lines while recombinants of F. pratensis chromosome 3 were used to allocate the markers to seven chromosome bins.

Conclusion

The resources developed in this project will facilitate the development of genetic maps in Festuca and Lolium, the analysis on genetic diversity, and the monitoring of the genomic constitution of the Festuca × Lolium hybrids. They will also enable marker-assisted selection for multiple traits or for specific genome regions.

Comments

This article is published as Kopecký, David, Jan Bartoš, Adam J. Lukaszewski, James H. Baird, Vladimír Černoch, Roland Kölliker, Odd Arne Rognli et al. "Development and mapping of DArT markers within the Festuca-Lolium complex." BMC genomics 10, no. 1 (2009): 473. doi:10.1186/1471-2164-10-473, Posted with permission.

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