Structural differences and differential expression among rhabdomeric opsins reveal functional change after gene duplication in the bay scallop, Argopecten irradians (Pectinidae)

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2016-01-01
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Porath-Krause, Anita
Pairett, Autum
Faggionato, Davide
Birla, Bhagyashree
Sankar, Kannan
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Serb, Jeanne
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Ecology, Evolution and Organismal Biology

The Department of Ecology, Evolution, and Organismal Biology seeks to teach the studies of ecology (organisms and their environment), evolutionary theory (the origin and interrelationships of organisms), and organismal biology (the structure, function, and biodiversity of organisms). In doing this, it offers several majors which are codirected with other departments, including biology, genetics, and environmental sciences.

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The Department of Ecology, Evolution, and Organismal Biology was founded in 2003 as a merger of the Department of Botany, the Department of Microbiology, and the Department of Zoology and Genetics.

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2003–present

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Abstract

Background

Opsins are the only class of proteins used for light perception in image-forming eyes. Gene duplication and subsequent functional divergence of opsins have played an important role in expanding photoreceptive capabilities of organisms by altering what wavelengths of light are absorbed by photoreceptors (spectral tuning). However, new opsin copies may also acquire novel function or subdivide ancestral functions through changes to temporal, spatial or the level of gene expression. Here, we test how opsin gene copies diversify in function and evolutionary fate by characterizing four rhabdomeric (Gq-protein coupled) opsins in the scallop, Argopecten irradians, identified from tissue-specific transcriptomes.

Results

Under a phylogenetic analysis, we recovered a pattern consistent with two rounds of duplication that generated the genetic diversity of scallop Gq-opsins. We found strong support for differential expression of paralogous Gq-opsins across ocular and extra-ocular photosensitive tissues, suggesting that scallop Gq-opsins are used in different biological contexts due to molecular alternations outside and within the protein-coding regions. Finally, we used available protein models to predict which amino acid residues interact with the light-absorbing chromophore. Variation in these residues suggests that the four Gq-opsin paralogs absorb different wavelengths of light.

Conclusions

Our results uncover novel genetic and functional diversity in the light-sensing structures of the scallop, demonstrating the complicated nature of Gq-opsin diversification after gene duplication. Our results highlight a change in the nearly ubiquitous shadow response in molluscs to a narrowed functional specificity for visual processes in the eyed scallop. Our findings provide a starting point to study how gene duplication may coincide with eye evolution, and more specifically, different ways neofunctionalization of Gq-opsins may occur.

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This article is published as Porath-Krause, Anita J., Autum N. Pairett, Davide Faggionato, Bhagyashree S. Birla, Kannan Sankar, and Jeanne M. Serb. "Structural differences and differential expression among rhabdomeric opsins reveal functional change after gene duplication in the bay scallop, Argopecten irradians (Pectinidae)." BMC evolutionary biology 16, no. 1 (2016): 250. doi: 10.1186/s12862-016-0823-9. Posted with permission.

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Fri Jan 01 00:00:00 UTC 2016
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